Xavier Robin – Bibliography

Papers as first author

  1. Robin X., Hoogland C., Appel R. D. & Lisacek F. (2008). MIAPEGelDB, a web-based submission tool and public repository for MIAPE Gel electrophoresis documents. Journal of Proteomics 71 (2), p. 249–251. PMID: 18590991. DOI: 10.1016/j.jprot.2008.06.005. 13 references, Citations. Download: PDF.
  2. Robin X., Turck N., Hainard A., Lisacek F., Sanchez J.-C. & Müller M. (2009). Bioinformatics for protein biomarker panel classification: What is needed to bring biomarker panels into in vitro diagnostics? Expert Review of Proteomics 6 (6), p. 675–689. PMID: 19929612. DOI: 10.1586/EPR.09.83. 94 references, Citations. Download: PDF.
  3. Robin X., Turck N., Hainard A., Tiberti N., Lisacek F., Sanchez J.-C. & Müller M. (2011). pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinformatics 12, p 77. PMID: 21414208. DOI: 10.1186/1471-2105-12-77. 33 references, Citations. Download: PDF.
  4. Robin X., Turck N., Hainard A., Tiberti N., Lisacek F., Sanchez J.-C. & Müller M. (2013). PanelomiX: A threshold-based algorithm to create panels of biomarkers. Translational Proteomics 1 (1), p. 57–64. DOI: 10.1016/j.trprot.2013.04.003. 33 references, Citations. Download: PDF.
  5. Robin X., Creixell P., Radetskaya O., Santini C. C., Longden J. & Linding R. (2013). Personalized network-based treatments in oncology. Clinical Pharmacology & Therapeutics, 94 (6)p.646–650. PMID: 23995267. DOI: 10.1038/clpt.2013.171. 52 references, Citations. Download: PDF.
  6. Robin X., Haas J., Gumienny R., Smolinski A., Tauriello G. & Schwede T. (2021). Continuous Automated Model EvaluatiOn (CAMEO)—Perspectives on the future of fully automated evaluation of structure prediction methods. Proteins: Structure, Function, and Bioinformatics, 89 (12), p. 1977–1986. PMID: 34387007. DOI: 10.1002/prot.26213. Citations. Open Access.
  7. Robin X., Studer G., Durairaj J., Eberhardt J., Schwede T. & Walters W. P. (2023). Assessment of protein–ligand complexes in CASP15. Proteins: Structure, Function, and Bioinformatics, 91 (12), p. 1811–1821. PMID: 37795762. DOI: 10.1002/prot.26601. Citations. Open Access.

As co-first author

* These authors contributed equally.

  1. Longden J.*, Robin X.*, Engel M.*, Ferkinghoff-Borg J., Kjær I., Horak I. D., Pedersen M. W. & Linding R. (2021). Deep neural networks identify signaling mechanisms of ErbB-family drug resistance from a continuous cell morphology space. Cell Reports 34 (3), 108657. PMID: 33472071. DOI: 10.1016/j.celrep.2020.108657. Citations.


  1. Robin X. (2012). Panels of biomarkers to improve patient classification in brain diseases. Doctoral dissertation, University of Geneva. Institution link: 24210. Download: PDF.

Book Chapters

  1. Robin X. (2019). PanelomiX for the Combination of Biomarkers. In: Brun V. & Couté Y. (eds) Proteomics for Biomarker Discovery. Methods in Molecular Biology, vol. 1959, p. 261&ndash273. Humana Press, New York, NY. PMID: 30852828. DOI: 10.1007/978-1-4939-9164-8_17. Citations.
  2. Robin X. Waterhouse A. M., Bienert S., Studer G., Alexander L. T., Tauriello G., Schwede T. & Pereira J. (2024). The SWISS‐MODEL Repository of 3D Protein Structures and Models. In: Daina A., Przewosny M. & Zoete V. Brun V. (eds) Open Access Databases and Datasets for Drug Discovery. Methods and Principles in Medicinal Chemistry, vol. 83, p. 175&ndash199. John Wiley & Sons, Ltd. DOI: 10.1002/9783527830497.ch6. Citations.

Papers as co-author

  1. Hoogland C., Walther D., Palagi P. M., Bouchet G., Mostaguir M., Robin X., Appel R. D. & Lisacek F. (2008). A suite of tools to analyse and publish 2-DE data. Proteomics 8 (23–24), p. 4907–4909. PMID: 19072735. DOI: 10.1002/pmic.200800301. Citations.
  2. Hainard A., Tiberti N., Robin X., Lejon V. Ngoyi D. M., Matovu E., Enyaru J. C., Fouda C., Ndung'u J. M., Lisacek F., Müller M., Turck N. & Sanchez J.-C. (2009). A Combined CXCL10, CXCL8 and H-FABP Panel for the Staging of Human African Trypanosomiasis Patients. PLoS Neglected Tropical Diseases 3 (6), p. e459. PMID: 19554086. DOI: 10.1371/journal.pntd.0000459. Citations.
  3. Turck N., Vutskits L., Sanchez-Pena P., Robin X., Hainard A., Gex-Fabry M., Fouda C., Bassem H., Müller M., Lisacek F., Puybasset L. & Sanchez J.-C. (2010). A multiparameter panel method for outcome prediction following aneurysmal subarachnoid hemorrhage. Intensive Care Medicine 36 (1), p. 107–115. PMID: 19760205. DOI: 10.1007/s00134-009-1641-y. Citations.
  4. Tiberti N., Hainard A., Lejon V., Robin X., Ngoyi D. M., Turck N., Matovu E., Enyaru J., Ndung'u J. M., Scherl A., Dayon L. & Sanchez J.-C. (2010). Discovery and verification of osteopontin and beta-2-microglobulin as promising markers for staging human African trypanosomiasis. Molecular & Cellular Proteomics 9 (12), p. 2783–2795. PMID: 20724469. DOI: 10.1074/mcp.M110.001008. Citations.
  5. Hainard A., Tiberti N., Robin X., Ngoyi D. M., Matovu E., Enyaru J. C., Müller M., Turck N., Ndung'u J. M., Lejon V. & Sanchez J.-C. (2011). Matrix metalloproteinase-9 and intercellular adhesion molecule 1 are powerful staging markers for human African trypanosomiasis. Tropical Medicine and International Health 16 (1), p. 119–126. PMID: 20958893. DOI: 10.1111/j.1365-3156.2010.02642.x. Citations.
  6. Tiberti N., Hainard A., Lejon V., Courtioux B., Matovu E., Enyaru J. C., Robin X., Turck N., Kristensson K., Ngoyi D. M., Vatunga G. M. L., Krishna S., Büscher P., Bisser S., Ndung'u J. M. & Sanchez J.-C. (2012). Cerebrospinal fluid neopterin as marker of the meningo-encephalitic stage of Trypanosoma brucei gambiense sleeping sickness. PLoS ONE 7 (7), p. e40909. PMID: 22815865. DOI: 10.1371/journal.pone.0040909. Citations.
  7. Turck N., Robin X., Walter N., Fouda C., Hainard A., Sztajzel R., Wagner G., Hochstrasser D., Montaner J., Burkhard P. R. & Sanchez J.-C. (2012). Blood Glutathione S-Transferase-π as a Time Indicator of Stroke Onset. PLoS ONE, 7 (9), p. e43830. PMID: 23028472. DOI: 10.1371/journal.pone.0043830. Citations.
  8. Copin J.-C., Rebetez M. M., Turck N., Robin X., Sanchez J.-C., Schaller K., Gasche Y. & Walder B. (2012). MMP-9 and cellular fibronectin plasma concentrations are predictors of the composite endpoint of length of stay and death in the intensive care unit after severe traumatic brain injury. Scandinavian Journal of Trauma, Resuscitation and Emergency Medicine, 20 (1), p. 83. PMID: 23249478. DOI: 10.1186/1757-7241-20-83. Citations.
  9. Glück F., Hoogland C., Antinori P., Robin X., Nikitin F., Zufferey A., Pasquarello C., Fétaud V., Dayon L., Müller M., Lisacek F., Geiser L., Hochstrasser D., Sanchez J.-C. & Scherl A. (2013). EasyProt – an easy-to-use graphical platform for proteomics data analysis. Journal of Proteomics, 79, p. 146‑160. PMID: 23277275. DOI: 10.1016/j.jprot.2012.12.012. Citations.
  10. Tiberti N., Matovu E., Hainard A., Enyaru J. C., Lejon V., Robin X., Turck N., Ngoyi D. M., Krishna S., Bisser S., Courtioux B., Büscher P., Kristensson K., Ndung’u J. M. & Sanchez J.-C., (2013). New biomarkers for stage determination in Trypanosoma brucei rhodesiense sleeping sickness patients. Clinical and Translational Medicine, 2 (1), p. 1. PMID: 23369533. DOI: 10.1186/2001-1326-2-1. Citations.
  11. Tiberti N., Lejon V., Hainard A., Courtioux B., Robin X., Turck N., Kristensson K., Matovu E., Enyaru J. C., Mumba Ngoyi D., Krishna S., Bisser S., Ndung′u J. M., Büscher P. & Sanchez J.-C. (2013). Neopterin Is a Cerebrospinal Fluid Marker for Treatment Outcome Evaluation in Patients Affected by Trypanosoma brucei gambiense Sleeping Sickness. PLOS Neglected Tropical Diseases, 7 (2), p. e2088. PMID: 23469311. DOI: 10.1371/journal.pntd.0002088. Citations.
  12. Walder B., Robin X., Rebetez M. M. L., Copin J.-C., Gasche Y., Sanchez J.-C. & Turck N. (2013), The prognostic significance of the serum biomarker H-FABP in comparison with S100b in severe traumatic brain injury. Journal of Neurotrauma, 30 (19), p. 1631‑1637. PMID: 23590685. DOI: 10.1089/neu.2012.2791. Citations.
  13. Horn H., Schoof E. M., Kim J., Robin X., Miller M. L., Diella F., Palma A., Cesareni G., Jensen L. J. & Linding R., (2014). KinomeXplorer: an integrated platform for kinome biology studies. Nature Methods, 11 (6), p. 603–604. PMID: 24874572. DOI: 10.1038/nmeth.2968. Citations.
  14. Calderón-Santiago, M., Priego-Capote, F., Turck, N., Robin X., Jurado-Gámez, B., Sanchez, J.C., & Castro, M.D.L. de (2015). Human sweat metabolomics for lung cancer screening. Analytical and Bioanalytical Chemistry 407 (18), p 5381-5392. PMID: 25935675. DOI: 10.1007/s00216-015-8700-8. Citations.
  15. Severino, V., Dumonceau, J.-M., Delhaye, M., Moll, S., Annessi-Ramseyer, I., Robin X., Frossard, J.-L., & Farina, A. (2017). Extracellular Vesicles in Bile as Markers of Malignant Biliary Stenoses. Gastroenterology 153, p. 495–504.e8. PMID: 28479376. DOI: 10.1053/j.gastro.2017.04.043. Citations.
  16. Engel, M., Longden, J., Ferkinghoff-Borg, J., Robin X., Saginc, G., & Linding, R. (2018). Bowhead: Bayesian modelling of cell velocity during concerted cell migration. PLOS Computational Biology 14, e1005900. PMID: 29309407. DOI: 10.1371/journal.pcbi.1005900. Citations.
  17. Bonnardel, F., Mariethoz, J., Salentin, S., Robin X., Schroeder, M., Perez, S., Lisacek, F., & Imberty, A. (2019). UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. Nucleic Acids Research, 47 (D1), p. D1236–D1244. PMID: 30239928. DOI: 10.1093/nar/gky832. Citations.
  18. Madsen R. R., Longden J., Knox R. G., Robin X., Völlmy F., Macleod K. G., Moniz L. S., Carragher N. O., Linding R., Vanhaesebroeck B. & Semple R. K. (2021). NODAL/TGFβ signalling mediates the self-sustained stemness induced by PIK3CAH1047R homozygosity in pluripotent stem cells. Disease Models & Mechanisms 14 (3) dmm048298. PMID: 33514588. DOI: 10.1242/dmm.048298. Citations.
  19. Madsen R. R., Erickson E., C., Rueda O. M., Robin X., Caldas C., Toker A., Semple R. K. & Vanhaesebroeck B. (2021). Positive correlation between transcriptomic stemness and PI3K/AKT/mTOR signaling scores in breast cancer, and a counterintuitive relationship with PIK3CA genotype. PLoS genetics 17 (11), e1009876. PMID: 34762647. DOI: 10.1371/journal.pgen.1009876. Citations.
  20. Kryshtafovych A., Antczak M., Szachniuk M., Zok T., Kretsch R. C., Rangan R., Pham P., Das R., Robin X., Studer G., Durairaj J., Eberhardt J., Sweeney A., Topf M., Schwede T., Fidelis K. & Moult J. (2023). New prediction categories in CASP15. Proteins: Structure, Function, and Bioinformatics, 91 (12), p. 1550–1557. PMID: 37306011. DOI: 10.1002/prot.26515. Citations. Open Access.
  21. Leemann M., Sagasta S., Eberhardt J., Schwede T., Robin X., Durairaj J. (2023). Automated benchmarking of combined protein structure and ligand conformation prediction. Proteins: Structure, Function, and Bioinformatics, 91 (12), p. 1912–1924. PMID: 37885318. DOI: 10.1002/prot.26605. Citations. Open Access.

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